Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015106.1 Corchorus olitorius cultivar O-4 contig15139, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33301

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
146--284
49
2.9
48
81
7
156
28
16
4
51
1.63
3712--3762
25
2.0
26
96
3
95
54
7
3
33
1.47
4672--4732
27
2.3
25
79
17
70
49
1
3
45
1.28
4674--4726
27
2.0
27
88
7
81
49
1
3
45
1.31
4715--4759
12
3.8
12
82
8
56
60
0
2
37
1.09
4714--4762
23
2.1
24
92
3
82
63
0
2
34
1.06
4873--4976
43
2.4
44
85
1
138
41
14
8
35
1.77
4873--5019
22
6.8
21
73
11
120
40
14
8
37
1.76
13210--14175
55
17.5
54
79
10
937
30
17
5
46
1.72
13084--13620
269
2.0
267
95
0
957
29
18
5
46
1.72
13165--14182
269
3.7
269
81
10
951
30
17
5
46
1.71
13210--14142
169
5.6
166
78
12
938
29
17
5
47
1.71
13459--14142
224
3.1
221
83
10
840
30
16
5
47
1.70
13224--14235
279
3.7
276
79
12
854
29
17
5
46
1.72
14140--14275
60
2.3
60
88
3
204
24
22
4
49
1.68
16135--16219
6
15.3
6
92
4
112
18
0
0
81
0.70
16139--16218
5
14.8
5
91
8
106
18
0
0
81
0.70
16139--16219
22
3.7
22
90
8
130
18
0
0
81
0.69
17037--17125
16
5.6
16
79
10
110
6
13
42
37
1.71
17037--17125
32
2.8
32
96
0
160
6
13
42
37
1.71
17703--17727
12
2.1
12
100
0
50
24
8
24
44
1.80
17883--17923
6
7.2
6
86
10
50
0
21
51
26
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17884--17923
11
3.5
11
93
3
62
0
22
52
25
1.47
17883--17922
17
2.4
17
83
12
55
0
22
52
25
1.47
17912--17955
16
2.8
16
89
0
70
6
15
40
36
1.74
19577--19609
14
2.4
14
85
5
50
48
0
12
39
1.40
21650--21679
12
2.5
12
88
0
51
13
6
16
63
1.50
24854--24895
12
3.5
12
80
9
50
9
4
9
76
1.15
26778--26830
11
5.2
10
78
17
56
41
0
18
39
1.51
26790--26825
19
1.9
18
88
5
54
41
0
22
36
1.54
32062--32138
27
2.9
27
84
7
102
40
23
14
22
1.90
32415--32661
90
2.8
90
87
4
342
29
27
16
26
1.97
32664--32863
35
5.7
35
87
1
294
30
22
18
29
1.97

Tables:   1

The End!