Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015155.1 Corchorus olitorius cultivar O-4 contig15188, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49421

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3565--3597
10
3.3
10
95
0
57
42
0
6
51
1.26
4880--4916
17
2.1
18
95
5
67
29
5
27
37
1.79
7568--7601
2
17.0
2
93
0
59
50
2
0
47
1.16
8216--8281
24
2.8
24
80
0
69
43
22
18
15
1.87
10699--10734
2
19.0
2
88
11
58
50
0
0
50
1.00
10691--10734
23
1.9
23
86
9
63
47
0
2
50
1.13
11420--11453
12
2.8
12
81
0
50
44
26
20
8
1.81
11417--11471
21
2.4
23
79
8
60
45
30
18
5
1.72
13103--13164
12
5.2
12
80
7
72
48
30
14
6
1.69
15732--15791
31
1.9
31
93
0
102
30
16
23
30
1.96
15748--15911
60
2.7
59
86
3
238
35
18
20
25
1.95
15953--16053
31
3.3
31
72
15
102
27
17
16
37
1.92
15952--16115
60
2.7
61
85
5
237
29
18
16
35
1.93
16488--16529
15
2.7
15
92
3
66
64
14
9
11
1.50
22338--22392
26
2.2
26
90
6
87
36
14
12
36
1.84
22374--22412
18
2.1
19
90
4
62
23
12
10
53
1.69
33246--33280
17
2.1
17
88
0
52
42
0
0
57
0.99
35086--35133
16
2.9
16
84
9
53
8
22
2
66
1.29
37264--37291
2
14.0
2
100
0
56
50
0
0
50
1.00
41925--41972
21
2.3
21
88
0
69
43
14
12
29
1.82
42830--42928
29
3.3
29
72
15
103
33
17
21
28
1.95
42801--42959
60
2.6
59
88
7
239
34
16
20
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42859--42959
31
3.3
30
72
18
93
35
16
20
26
1.94
43036--43134
29
3.4
28
67
20
76
26
21
20
32
1.97
43002--43165
60
2.7
60
93
0
265
25
20
20
34
1.96
44788--44820
2
17.0
2
93
6
59
51
0
0
48
1.00

Tables:   1

The End!