Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015165.1 Corchorus olitorius cultivar O-4 contig15198, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20730

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3019--3088
31
2.3
31
87
2
97
40
15
12
31
1.85
4207--4259
25
2.3
22
74
20
63
49
22
11
16
1.78
4251--9444
332
15.8
331
80
7
5136
34
16
14
34
1.89
10359--13207
332
8.6
331
86
3
3607
32
17
15
35
1.90
10359--13207
666
4.3
661
83
4
3541
32
17
15
35
1.90
13115--13295
88
2.1
88
98
0
353
37
18
4
39
1.71
15033--18799
333
11.4
330
83
5
3836
33
17
14
34
1.91
18840--18869
2
15.5
2
93
6
53
46
0
0
53
1.00
19423--20039
343
1.8
340
85
4
884
31
17
14
36
1.90
20280--20515
123
1.9
122
85
2
321
36
16
11
34
1.85

Tables:   1

The End!