Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015188.1 Corchorus olitorius cultivar O-4 contig15221, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30437

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1708--1732
1
25.0
1
100
0
50
0
0
0
100
0.00
3704--8180
333
13.6
330
78
7
3968
32
13
15
37
1.88
3704--8187
332
13.6
331
78
7
3824
32
14
15
37
1.88
11741--11792
12
4.0
12
77
22
52
3
11
7
76
1.12
12259--12350
37
2.4
37
89
5
130
19
44
2
33
1.63
12323--12375
26
2.0
26
100
0
106
22
32
0
45
1.53
12588--12650
31
2.0
31
100
0
126
34
34
17
12
1.88
12840--12901
30
2.1
30
100
0
124
30
16
37
16
1.90
12507--12956
224
2.0
224
91
3
728
34
19
25
20
1.96
20122--21228
331
3.3
331
79
6
1138
36
16
15
32
1.90
17703--21496
663
5.7
661
77
10
3080
36
15
14
33
1.88
25494--29718
337
12.7
328
73
13
1143
37
15
14
33
1.87
26192--26227
2
18.0
2
88
0
54
47
2
0
50
1.15
25473--30020
349
13.6
329
75
10
3162
36
15
14
33
1.88
30162--30202
2
20.5
2
94
0
73
48
0
2
48
1.14

Tables:   1

The End!