Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015203.1 Corchorus olitorius cultivar O-4 contig15236, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39454

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
176--2678
329
7.6
329
78
7
2198
37
14
14
33
1.87
3--2678
980
2.7
975
77
9
2371
37
14
14
33
1.87
2935--3154
60
3.7
59
88
3
334
34
18
19
28
1.95
2936--3154
119
1.8
119
91
1
359
34
17
19
28
1.95
3196--3299
31
3.4
31
70
15
99
24
17
20
38
1.93
3199--3359
60
2.7
60
88
1
234
25
17
19
37
1.94
3486--3532
15
3.1
16
81
9
62
57
0
0
42
0.98
13011--13083
29
2.5
28
82
4
83
24
19
13
42
1.87
13214--13280
29
2.3
30
81
2
82
41
19
20
17
1.90
22626--22653
14
2.0
14
100
0
56
21
35
14
28
1.92
26345--26405
30
2.0
30
100
0
122
37
32
13
16
1.87
26877--26906
15
1.9
16
93
6
53
43
0
3
53
1.17
27257--30754
331
10.6
329
78
8
3232
33
14
14
36
1.87
27257--30738
332
10.6
330
79
7
3210
33
14
14
36
1.87

Tables:   1

The End!