Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015213.1 Corchorus olitorius cultivar O-4 contig15246, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71949

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
720--789
23
3.0
23
80
14
72
35
8
0
55
1.30
10304--10335
2
16.5
2
93
6
57
50
0
0
50
1.00
10304--10332
15
1.9
15
100
0
58
51
0
0
48
1.00
19023--19057
18
1.9
18
94
0
61
42
25
5
25
1.77
23474--23520
18
2.6
18
79
0
58
25
27
12
34
1.92
24964--25023
31
2.0
31
86
3
86
18
16
26
38
1.92
26808--26853
24
1.9
24
100
0
92
30
13
19
36
1.90
27867--27902
5
7.2
5
100
0
72
19
19
0
61
1.35
28214--28241
5
5.6
5
100
0
56
21
17
0
60
1.36
30677--32844
666
3.3
656
77
9
1834
33
13
15
37
1.86
30667--32844
333
6.6
331
76
10
1610
33
13
15
37
1.86
41378--41408
6
5.2
6
100
0
62
51
32
0
16
1.44
43560--43636
31
2.5
30
85
8
100
37
19
14
28
1.91
56129--56196
33
2.1
33
83
5
84
19
32
27
20
1.97
56576--56601
2
13.0
2
100
0
52
50
0
0
50
1.00
58857--58921
34
1.9
34
100
0
130
36
16
3
43
1.64
60555--60593
18
2.0
21
85
14
57
20
15
25
38
1.92
68265--68291
4
6.8
4
100
0
54
22
0
0
77
0.76
70134--71383
622
2.0
622
93
0
2126
34
16
15
32
1.91
70774--71945
336
3.5
334
82
2
1501
34
17
15
32
1.91

Tables:   1

The End!