Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015335.1 Corchorus olitorius cultivar O-4 contig15368, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20822

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1490--1514
12
2.1
12
100
0
50
8
40
16
36
1.77
5699--5729
4
7.8
4
100
0
62
0
22
0
77
0.77
11230--11285
26
2.2
26
87
6
78
23
8
1
66
1.30
13033--13077
12
3.5
13
81
9
56
57
11
0
31
1.33
13554--13631
28
2.8
29
75
13
72
37
8
16
37
1.80
14368--14410
3
15.0
3
85
9
63
32
0
0
67
0.91
14372--14416
22
2.1
21
91
4
72
26
0
0
73
0.84
14369--14407
19
2.0
19
90
5
60
30
0
0
69
0.89
16559--17115
279
2.0
277
83
7
709
34
12
16
36
1.87
16838--20290
323
10.7
321
86
4
4420
32
14
17
35
1.90
20516--20564
23
2.1
23
92
0
80
22
16
22
38
1.92
16838--20822
959
4.1
943
82
8
3762
32
14
17
35
1.90

Tables:   1

The End!