Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015376.1 Corchorus olitorius cultivar O-4 contig15409, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95394

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6476--6517
7
6.0
7
97
0
66
28
38
4
28
1.77
13412--13633
111
2.0
110
98
0
426
27
9
20
42
1.83
22899--22982
41
2.0
41
100
0
168
23
32
21
22
1.98
24492--24534
2
21.5
2
95
0
77
51
0
0
48
1.00
27441--27470
15
2.0
15
100
0
60
13
6
20
60
1.55
33300--33324
13
1.9
13
100
0
50
36
0
32
32
1.58
42038--42073
1
36.0
1
94
0
63
0
0
2
97
0.18
42032--42071
12
3.4
12
93
3
64
2
0
5
92
0.45
48291--48315
6
4.2
6
100
0
50
32
0
16
52
1.44
48553--48584
16
2.0
16
93
0
55
65
18
12
3
1.38
50543--50569
2
13.5
2
100
0
54
48
0
0
51
1.00
50838--50869
14
2.2
15
94
5
57
84
0
15
0
0.63
56599--56627
7
4.1
7
100
0
58
41
27
0
31
1.56
65275--65311
12
3.0
13
80
15
51
0
13
5
81
0.86
77651--77690
21
2.0
20
85
5
53
20
0
7
72
1.08
83324--83365
16
2.6
16
100
0
84
30
19
30
19
1.96
93806--95377
331
4.7
331
83
6
1986
35
17
15
31
1.91
94722--95375
347
1.9
347
91
0
1067
35
17
15
31
1.92

Tables:   1

The End!