Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015379.1 Corchorus olitorius cultivar O-4 contig15412, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140476

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--35
2
17.5
2
100
0
70
48
0
0
51
1.00
810--844
15
2.4
15
90
4
54
22
45
17
14
1.84
2995--3046
20
2.7
19
83
16
79
50
23
3
23
1.66
5525--5633
58
1.9
57
83
5
139
22
15
5
56
1.59
8323--8769
177
2.5
177
96
0
831
33
11
22
32
1.90
9195--9232
12
3.0
13
84
7
51
55
2
0
42
1.14
9315--9395
22
3.8
21
80
1
90
38
7
7
46
1.60
9319--9418
43
2.3
44
81
5
114
39
11
8
42
1.70
9397--9501
21
4.9
21
76
14
88
30
18
10
40
1.84
9423--9513
21
4.2
20
83
7
74
27
18
9
43
1.82
9453--9526
22
3.4
22
79
5
62
24
18
9
47
1.78
10333--10391
24
2.6
22
81
7
66
61
10
15
13
1.57
12107--12180
32
2.3
32
95
0
130
14
13
24
47
1.81
31957--31999
12
3.5
12
87
6
68
88
0
11
0
0.52
31957--31997
21
2.0
21
90
9
66
87
0
12
0
0.53
38507--39045
105
5.1
105
98
0
1035
57
9
7
25
1.56
38507--39045
209
2.6
210
98
0
1035
57
9
7
25
1.56
42955--43000
23
2.0
23
100
0
92
43
4
8
43
1.55
53720--53787
25
2.6
24
76
17
64
20
10
5
63
1.47
67982--68017
14
2.6
14
90
0
54
80
0
19
0
0.71
68237--68264
2
14.0
2
100
0
56
50
0
0
50
1.00
73576--73743
63
2.5
66
93
6
279
23
10
15
50
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75904--76090
93
2.0
93
97
2
358
34
17
17
31
1.93
76677--76782
31
3.4
31
78
0
122
22
22
21
33
1.98
94283--94344
27
2.3
27
81
15
67
50
1
3
45
1.27
98322--98357
2
18.0
2
100
0
72
50
0
0
50
1.00
105015--105082
3
22.7
3
100
0
136
67
0
32
0
0.91
123020--123179
76
2.1
75
94
4
275
31
18
6
43
1.77
124170--124246
29
2.6
30
81
6
102
31
24
11
32
1.91
124511--124615
31
3.5
31
79
7
108
33
13
25
27
1.93
124539--124615
29
2.6
30
83
6
102
29
11
27
31
1.92
126153--126185
16
2.0
17
88
5
50
48
0
0
51
1.00
137144--137174
16
1.9
16
100
0
62
51
6
9
32
1.60
137831--137892
30
2.1
30
96
0
115
25
24
4
45
1.73
138007--140455
678
3.7
659
81
5
2723
36
15
15
32
1.90

Tables:   1

The End!