genome.fa.s15387.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015387.1 Corchorus olitorius cultivar O-4 contig15420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158998

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400--1360	332	2.9	321	79	8	944	31	13	16	38	1.88
3010--3050	20	2.0	20	100	0	82	56	9	19	14	1.66
14921--16851	334	5.9	331	77	6	1673	33	13	15	37	1.87
14908--16851	666	3.0	659	81	5	2108	33	13	15	37	1.87
20932--21034	31	3.4	30	70	14	95	34	20	17	27	1.95
20932--21095	31	5.5	31	65	17	94	34	18	18	29	1.94
20936--21100	60	2.8	59	89	2	240	34	18	18	29	1.94
21137--21240	31	3.4	31	71	12	99	26	20	17	35	1.94
21139--21301	60	2.7	60	85	1	220	27	18	17	36	1.94
24355--24381	2	13.5	2	100	0	54	51	0	0	48	1.00
32107--32133	1	27.0	1	100	0	54	100	0	0	0	0.00
41770--41909	75	1.9	75	95	0	253	22	16	25	35	1.95
44378--44417	22	1.9	22	85	10	57	42	7	17	32	1.77
44407--44479	22	3.4	22	69	16	62	35	6	12	45	1.69
44407--44507	40	2.4	42	80	6	107	36	6	12	43	1.70
45904--45940	19	1.9	19	94	0	65	29	18	13	37	1.90
57862--57915	27	1.9	28	88	7	83	29	3	12	53	1.56
58450--58507	19	2.9	20	79	5	64	32	18	12	36	1.88
63315--63343	6	4.8	6	100	0	58	51	0	13	34	1.42
80913--80952	16	2.5	15	84	11	53	70	0	25	5	1.08
80914--80952	15	2.5	15	83	8	51	71	0	23	5	1.05
80910--80969	26	2.3	26	77	5	68	61	0	33	5	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99514--99539	3	8.7	3	100	0	52	65	0	34	0	0.93
104678--104706	14	2.0	15	93	6	51	48	3	13	34	1.60
125827--125861	2	17.5	2	93	0	61	51	48	0	0	1.00
140805--140846	2	21.0	2	100	0	84	50	0	0	50	1.00
142428--142601	87	2.0	87	98	0	339	22	9	30	37	1.85
156222--156274	2	27.0	2	78	17	58	45	5	0	49	1.26
156876--158579	309	5.2	310	74	13	1169	32	14	16	36	1.89
156848--158922	332	6.4	327	78	10	1838	32	14	16	36	1.89

Tables:   1

The End!