genome.fa.s15403.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015403.1 Corchorus olitorius cultivar O-4 contig15436, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  179495

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5127--5163	18	2.1	18	100	0	74	35	16	16	32	1.91
9056--9102	3	15.7	3	95	0	85	2	0	65	31	1.04
9563--9703	57	2.5	58	82	5	162	28	18	32	20	1.96
14786--14841	29	1.9	29	89	7	87	42	7	21	28	1.79
14786--14853	29	2.3	29	82	9	84	44	8	22	25	1.81
19244--19290	14	3.4	14	82	11	60	2	38	2	57	1.23
19256--19307	22	2.5	20	74	17	52	0	38	5	55	1.24
22190--22241	15	3.3	17	65	29	51	57	1	3	36	1.28
23785--24018	81	2.9	81	92	1	369	32	15	9	42	1.79
24055--24096	18	2.3	18	100	0	84	42	7	0	50	1.30
26555--26581	2	13.5	2	100	0	54	48	0	0	51	1.00
27397--27441	16	2.7	17	86	6	74	42	40	13	4	1.64
28977--29033	15	3.6	15	75	17	53	40	36	15	7	1.75
35651--35692	2	21.0	2	100	0	84	50	0	0	50	1.00
38175--38199	6	4.2	6	100	0	50	52	48	0	0	1.00
49048--49094	2	23.0	2	82	4	58	48	8	0	42	1.33
49048--49098	8	6.2	8	88	4	75	49	9	0	41	1.36
55106--55135	7	4.4	7	95	4	53	86	13	0	0	0.57
70909--70944	17	2.1	17	89	0	54	2	13	2	80	0.93
77004--77037	17	1.9	18	88	5	52	20	26	5	47	1.73
79263--79487	111	2.0	111	95	1	407	39	18	9	32	1.83
83643--83670	1	28.0	1	100	0	56	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91474--91540	31	2.1	32	89	8	102	29	25	10	34	1.89
116958--117011	24	2.3	23	90	9	83	18	27	11	42	1.84
116966--117011	24	1.9	24	100	0	92	19	26	13	41	1.88
119462--119574	60	1.9	60	90	0	181	38	12	15	33	1.85
119623--119788	57	2.8	58	79	11	178	30	16	16	36	1.91
128245--128269	10	2.5	10	100	0	50	88	0	12	0	0.53
128271--128308	19	2.0	20	85	15	53	52	0	26	21	1.47
131020--131052	3	11.0	3	100	0	66	33	0	33	33	1.58
133510--133642	59	2.3	59	87	0	185	38	15	16	29	1.90
133549--133645	31	3.2	31	64	19	78	38	13	20	27	1.90
133531--133645	59	1.9	59	92	0	194	35	13	20	30	1.91
133688--133804	60	2.0	60	89	0	180	30	18	20	29	1.97
138340--140692	25	90.6	25	88	6	3126	30	13	22	33	1.93
138340--140692	52	45.3	50	89	5	3180	30	13	22	33	1.93
167017--168474	325	4.5	325	89	2	2166	33	15	17	33	1.91
169121--169178	10	6.4	9	74	21	50	75	3	10	10	1.15
169135--169172	16	2.3	17	86	4	51	81	2	7	7	0.96
170750--170901	76	2.0	76	82	5	182	17	29	28	24	1.97
171252--175316	647	6.3	643	87	4	5789	33	14	17	35	1.89
171252--179370	323	24.5	323	75	11	6108	33	13	17	35	1.89
171252--175316	970	4.2	967	88	3	5890	33	14	17	35	1.89
175216--175418	101	2.0	101	85	2	273	33	10	14	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175629--175772	69	2.1	69	94	0	252	38	9	12	40	1.75
177288--177431	68	2.1	69	92	1	245	38	8	13	40	1.74
179296--179440	69	2.1	69	92	0	245	39	7	11	42	1.69

Tables:   1

The End!