Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015405.1 Corchorus olitorius cultivar O-4 contig15438, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71525

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--1717
333
5.2
331
77
9
1469
36
15
14
32
1.89
2804--2833
15
1.9
16
93
6
53
53
3
0
43
1.17
3786--3820
18
1.9
18
100
0
70
57
0
20
22
1.41
3795--3819
13
1.9
13
100
0
50
56
0
20
24
1.43
17959--18038
39
2.1
39
97
0
151
33
13
25
27
1.93
18334--18364
15
2.1
15
100
0
62
41
25
0
32
1.56
23456--23489
16
2.1
16
100
0
68
5
8
23
61
1.47
24706--25347
213
3.0
213
95
0
1176
24
20
24
30
1.99
36307--36372
22
3.0
22
88
2
105
34
22
22
19
1.96
38559--38614
17
3.3
17
80
14
53
37
21
17
23
1.94
38860--38912
26
2.0
26
96
0
97
35
11
13
39
1.80
54681--54895
106
2.0
106
100
0
430
33
19
18
28
1.95
62697--62838
40
3.5
40
86
1
187
11
21
33
33
1.90
64609--64883
20
13.8
20
65
3
133
34
7
28
30
1.84
64596--64883
40
7.2
40
90
3
427
34
7
28
30
1.84
64596--64883
81
3.6
81
90
1
438
34
7
28
30
1.84
66643--66689
23
2.0
23
87
0
67
40
27
4
27
1.75
67932--68009
32
2.6
30
76
13
81
34
16
28
20
1.94
68173--71509
333
10.0
334
89
2
4689
31
15
15
36
1.89

Tables:   1

The End!