Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015409.1 Corchorus olitorius cultivar O-4 contig15442, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70847

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--88
12
7.4
12
84
7
99
0
35
0
64
0.94
1124--1181
21
2.9
19
84
5
71
31
20
12
36
1.89
23943--24097
72
2.2
73
86
2
215
29
13
25
30
1.94
24667--24703
18
2.1
18
100
0
74
40
16
21
21
1.91
32594--32624
11
2.8
11
100
0
62
35
0
0
64
0.94
46943--46972
14
2.1
14
93
0
51
30
6
30
33
1.83
49126--49299
88
2.0
87
89
1
267
32
14
31
21
1.94
53601--53627
1
27.0
1
100
0
54
0
0
0
100
0.00
54525--54553
2
14.5
2
100
0
58
0
0
48
51
1.00
64167--64225
29
2.0
29
90
3
91
33
25
11
28
1.91
64524--64599
29
2.6
30
87
8
111
34
9
23
32
1.87
67557--70833
334
10.0
332
82
5
3756
35
17
14
32
1.90

Tables:   1

The End!