Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015415.1 Corchorus olitorius cultivar O-4 contig15448, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94864

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
139--3587
330
10.5
329
83
5
4086
34
17
14
34
1.90
3102--4074
488
2.0
486
84
5
1261
33
18
14
33
1.91
3590--5917
332
7.1
330
86
4
3028
34
17
13
34
1.90
29883--29916
12
2.8
12
100
0
68
23
8
41
26
1.83
37273--37330
28
2.0
29
96
3
109
39
13
6
39
1.72
37295--37358
33
2.0
32
87
3
92
43
10
4
40
1.61
49256--49298
6
7.2
6
94
0
50
39
18
25
16
1.91
49264--49302
6
6.5
6
96
0
60
38
17
25
17
1.92
50147--50185
19
2.1
19
100
0
78
48
20
15
15
1.81
52752--52777
11
2.4
11
100
0
52
50
7
11
30
1.67
53949--53989
21
2.0
21
90
0
64
34
2
29
34
1.71
66826--66882
28
2.0
28
96
0
105
15
29
28
26
1.96
75316--75350
2
17.0
2
94
5
61
48
2
0
48
1.16
76575--76615
20
2.0
20
100
0
82
65
4
9
19
1.40
92850--94861
318
6.3
319
89
1
2922
34
16
15
32
1.91
92850--94861
635
3.2
633
88
3
2956
34
16
15
32
1.91

Tables:   1

The End!