Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015416.1 Corchorus olitorius cultivar O-4 contig15449, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106626

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1723
640
2.7
635
88
2
2647
34
17
15
32
1.91
1--1723
319
5.4
318
87
3
2292
34
17
15
32
1.91
1574--1901
178
1.8
179
92
0
550
35
17
10
35
1.85
1226--2220
496
2.0
498
86
3
1416
35
17
13
33
1.88
1723--5147
319
10.8
319
88
2
4786
34
16
15
33
1.90
12671--12702
2
16.0
2
100
0
64
50
0
0
50
1.00
19745--19794
12
3.6
13
82
17
57
0
32
0
68
0.90
19745--19800
17
3.2
17
74
20
53
1
30
0
67
1.01
34534--34611
29
2.6
30
85
6
95
56
10
5
28
1.54
35088--35122
18
1.9
18
88
0
52
42
17
34
5
1.73
48485--48513
14
2.0
15
93
6
51
0
10
0
89
0.48
56414--56473
24
2.5
24
94
0
102
0
43
5
51
1.23
56415--56473
12
4.9
12
74
14
59
0
42
5
52
1.23
62174--62317
29
4.8
30
80
10
161
43
14
22
19
1.87
62180--62317
60
2.3
60
97
0
258
42
15
23
18
1.88
67325--67399
29
2.6
29
100
0
150
34
25
12
28
1.91
73482--73515
16
2.1
16
94
0
59
23
11
20
44
1.84
85644--85683
3
13.3
3
83
0
53
62
2
32
2
1.22
95741--95769
15
1.9
15
100
0
58
44
20
6
27
1.77
98112--98158
22
2.1
22
100
0
94
29
4
12
53
1.58
104490--106623
334
6.4
333
87
3
3008
31
15
15
37
1.89
104490--106623
666
3.2
661
89
3
3139
31
15
15
37
1.89

Tables:   1

The End!