Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015442.1 Corchorus olitorius cultivar O-4 contig15475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19279

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3974
329
12.1
327
79
6
4151
32
15
14
36
1.88
1--3974
662
6.0
661
88
3
5679
32
15
14
36
1.88
3768--4193
227
1.9
225
82
3
534
36
10
15
38
1.81
3986--4806
333
2.5
328
82
7
948
33
13
16
36
1.88
5627--5892
85
3.1
86
94
4
452
42
15
15
26
1.86
7093--7175
30
2.8
29
87
7
114
40
19
18
21
1.91
8864--9025
30
5.4
30
79
1
162
40
18
14
27
1.89
8852--9025
91
1.9
91
84
0
231
40
18
13
26
1.88
9023--11684
332
8.1
329
80
7
2702
33
14
16
34
1.89
15648--15678
10
3.1
10
100
0
62
0
9
32
58
1.31
18257--19279
337
3.1
330
82
7
1247
34
16
14
35
1.89

Tables:   1

The End!