Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015444.1 Corchorus olitorius cultivar O-4 contig15477, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69183

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1127--1158
14
2.1
16
88
11
50
87
0
6
6
0.67
4057--4163
29
3.7
29
92
1
169
18
27
15
38
1.91
25822--26541
372
2.0
362
87
5
1027
38
14
13
32
1.86
29380--29410
3
10.3
3
100
0
62
0
32
0
67
0.91
42516--42565
13
3.4
16
68
21
54
54
6
8
32
1.54
42517--42580
28
2.2
28
97
2
119
54
6
7
31
1.54
45594--45965
95
3.8
93
80
13
353
42
12
11
32
1.79
46870--46895
13
2.0
13
100
0
52
15
7
15
61
1.55
62117--62149
16
2.0
17
88
5
50
48
27
9
15
1.74
62189--63439
327
3.8
326
79
8
1212
34
13
16
35
1.88
63667--63717
17
3.1
16
83
13
59
33
23
21
21
1.97
63962--65904
331
5.9
330
78
5
1951
32
15
14
36
1.89
63962--67980
662
6.2
664
86
5
4456
32
15
14
36
1.88
65907--67980
329
6.3
328
81
4
2166
32
15
14
37
1.88
66015--67980
661
3.0
657
86
3
2555
33
15
14
36
1.88
67582--68385
404
2.0
407
81
2
963
32
15
14
37
1.88
67241--68716
736
2.0
736
96
0
2720
32
15
14
37
1.88
67998--68964
332
2.9
327
80
4
1170
33
15
14
36
1.87

Tables:   1

The End!