Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015457.1 Corchorus olitorius cultivar O-4 contig15490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18663

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7731--7951
122
1.8
122
92
0
379
13
23
21
42
1.88
8016--8082
20
3.3
20
72
2
71
32
8
26
31
1.87
8055--8289
32
7.1
32
89
8
364
30
8
26
34
1.87
8086--8329
104
2.3
104
94
2
427
31
8
27
33
1.87
8150--8212
20
3.1
20
69
2
54
30
6
28
34
1.82
8160--8222
20
3.2
20
72
0
72
31
9
23
34
1.87
8018--8289
136
2.0
136
97
0
517
30
8
26
33
1.87
8258--8346
20
4.4
20
72
1
70
35
5
28
30
1.80
8258--8346
40
2.2
40
89
2
133
35
5
28
30
1.80
9784--9851
32
2.1
32
100
0
136
36
13
14
35
1.85
10747--13742
333
9.1
333
87
3
4092
31
15
17
36
1.90
13749--15968
331
6.7
327
83
4
2458
31
15
16
36
1.91
13749--15970
663
3.4
662
83
4
2702
31
15
16
36
1.91
13749--15970
993
2.2
988
85
3
2980
31
15
16
36
1.91
18097--18372
62
4.4
62
94
3
489
35
23
37
3
1.71
18097--18370
128
2.2
126
96
2
498
35
23
37
3
1.72
18349--18462
24
4.9
24
67
16
87
48
19
28
3
1.65
18364--18462
34
2.9
34
98
0
189
48
18
30
3
1.63
18578--18663
2
43.0
2
100
0
172
50
0
50
0
1.00

Tables:   1

The End!