Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015461.1 Corchorus olitorius cultivar O-4 contig15494, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66716

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2328
332
7.0
334
89
1
3425
36
17
14
31
1.90
1--9432
668
14.2
664
85
5
11374
36
17
14
31
1.90
2326--9432
334
21.4
333
86
3
9149
36
17
14
31
1.90
9883--9996
55
2.1
55
100
0
228
25
19
27
28
1.99
29632--29665
3
11.3
3
100
0
68
67
0
0
32
0.91
34818--34960
6
22.8
6
69
11
54
44
5
34
15
1.70
34915--34972
27
2.1
27
83
0
71
43
5
34
17
1.71
34762--34978
114
1.9
114
92
0
362
45
5
33
15
1.69
40600--40653
27
2.0
27
100
0
108
25
25
18
29
1.98
40602--40648
14
3.4
14
73
26
55
27
25
17
29
1.97
46471--46786
152
2.0
152
92
5
469
45
14
15
24
1.84
51840--51889
26
1.9
26
83
0
64
22
6
20
52
1.68
53587--53614
2
14.0
2
100
0
56
50
50
0
0
1.00
56212--56361
60
2.5
61
84
8
200
34
13
20
32
1.91
56415--56514
31
3.3
31
74
5
114
26
19
18
37
1.94
56415--56568
60
2.6
60
89
0
227
27
19
17
35
1.94
59807--60021
111
1.9
113
92
4
362
27
8
13
49
1.71
65478--65536
21
3.0
20
77
5
66
37
8
20
33
1.83

Tables:   1

The End!