Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015468.1 Corchorus olitorius cultivar O-4 contig15501, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13038

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--262
121
2.0
127
87
7
376
51
1
10
37
1.46
4672--4730
15
3.8
15
93
4
91
42
0
1
55
1.09
4663--4730
31
2.2
31
86
7
93
42
0
2
54
1.15
5073--7838
333
8.3
330
78
7
2447
33
13
15
37
1.87
7853--9962
661
3.2
657
84
3
2596
34
16
15
33
1.90
7853--9962
332
6.4
332
86
2
2620
34
16
15
33
1.90
7853--9962
993
2.1
992
84
2
2731
34
16
15
33
1.90
9460--10461
499
2.0
498
86
1
1389
34
16
16
32
1.92
9960--11013
332
3.2
329
82
4
1142
33
16
14
35
1.90
10967--11090
62
2.0
62
96
0
230
41
10
14
33
1.80
12076--13038
331
2.9
333
92
1
1626
34
17
14
33
1.90

Tables:   1

The End!