Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015486.1 Corchorus olitorius cultivar O-4 contig15519, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16666

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6339--6363
2
12.5
2
100
0
50
52
48
0
0
1.00
6673--6719
22
2.1
22
84
7
60
29
8
12
48
1.71
6754--6877
22
5.6
22
72
11
101
39
15
8
36
1.78
6820--6891
22
3.3
21
72
20
58
37
16
11
34
1.84
6819--6916
44
2.2
44
80
3
108
35
15
13
35
1.86
7257--7316
22
2.7
23
78
5
68
41
13
6
38
1.70
7234--7316
23
3.7
23
75
12
64
40
12
8
38
1.73
7430--7486
22
2.6
22
86
5
71
35
19
3
42
1.68
7616--7766
22
6.9
22
74
10
103
40
15
6
37
1.74
7917--8142
22
10.1
22
76
11
158
34
17
12
34
1.88
7925--8142
44
4.9
44
79
5
213
33
17
13
34
1.89
7925--8142
68
3.3
66
82
7
235
33
17
13
34
1.89
7925--8116
66
2.9
68
83
8
200
34
18
12
34
1.89
14352--14581
22
10.6
22
75
7
177
39
16
11
32
1.85
14620--14704
22
4.0
21
79
10
84
30
20
9
40
1.84
14630--14704
22
3.5
20
80
10
87
33
18
9
38
1.83
14619--14704
44
2.0
43
84
4
111
30
20
9
39
1.84
14732--14813
22
3.8
21
73
13
58
34
13
9
42
1.77
15468--15515
21
2.3
20
89
3
69
47
2
12
37
1.53
15745--15813
36
1.9
36
96
0
129
47
7
7
37
1.59
16441--16555
42
2.8
41
81
9
135
49
7
3
39
1.49

Tables:   1

The End!