Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015488.1 Corchorus olitorius cultivar O-4 contig15521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31181

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2586--2614
2
14.5
2
100
0
58
51
0
0
48
1.00
3044--3648
22
27.1
22
68
14
230
37
9
17
34
1.84
3044--3648
44
13.5
44
71
10
282
37
9
17
34
1.84
4615--4762
74
2.0
74
97
0
278
33
6
15
44
1.73
5581--5660
40
2.0
40
92
0
133
35
17
6
41
1.75
8724--8888
22
7.5
22
75
12
144
38
8
15
36
1.78
8724--8893
44
3.9
43
77
11
161
38
8
15
37
1.78
8724--8888
66
2.5
66
79
8
162
38
8
15
36
1.78
8723--8907
22
8.5
22
76
11
105
39
8
15
36
1.78
8935--9004
22
3.2
22
85
0
77
35
12
11
40
1.80
9062--9151
22
4.2
22
73
11
78
36
14
10
38
1.80
9076--9204
42
3.0
43
79
3
143
41
13
7
37
1.74
9076--9168
22
4.3
23
72
16
74
40
10
9
38
1.73
24291--24519
75
3.1
75
74
6
185
27
16
18
37
1.92
24424--24586
75
2.2
75
80
4
177
29
17
19
34
1.94
25078--25121
23
1.9
23
95
0
79
13
4
38
43
1.65

Tables:   1

The End!