Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015501.1 Corchorus olitorius cultivar O-4 contig15534, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13982

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
810--929
62
1.9
62
93
0
204
22
34
23
20
1.97
810--947
62
2.2
62
85
2
170
23
32
23
21
1.98
3226--4082
333
2.6
335
82
4
1061
34
13
15
36
1.86
4220--6468
335
6.8
329
79
7
2066
33
14
14
37
1.87
6672--6717
23
2.0
23
100
0
92
21
26
34
17
1.95
7259--7339
39
2.0
40
92
2
137
50
8
3
37
1.51
7330--7379
26
2.0
25
92
4
82
28
6
10
56
1.56
11167--11192
2
13.0
2
100
0
52
50
0
0
50
1.00
11511--11549
20
2.0
19
85
5
51
43
15
0
41
1.46
13578--13612
4
8.8
4
100
0
70
25
22
0
51
1.48

Tables:   1

The End!