Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015576.1 Corchorus olitorius cultivar O-4 contig15609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83656

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2721--2749
2
14.5
2
100
0
58
0
0
48
51
1.00
4507--4597
29
3.1
29
96
0
164
40
17
4
37
1.70
5366--5414
26
1.9
25
83
4
62
20
20
6
53
1.67
15021--15106
36
2.4
36
90
0
127
48
9
18
23
1.76
15074--15207
33
3.9
33
80
11
121
44
10
15
29
1.80
15042--15207
36
4.7
35
80
7
151
45
10
16
28
1.80
28544--28599
14
4.1
14
77
6
53
55
0
1
42
1.10
28692--28724
16
2.0
17
88
5
50
48
0
0
51
1.00
33268--33497
126
1.8
126
89
1
363
35
16
26
20
1.95
36723--36867
49
3.0
48
77
17
142
28
15
5
49
1.67
48051--48076
3
8.7
3
100
0
52
69
0
30
0
0.89
53724--53763
19
2.1
19
95
0
71
12
32
12
42
1.80
57947--57987
21
2.0
21
85
9
57
58
9
2
29
1.43
69744--69866
61
2.0
61
98
0
237
33
6
16
43
1.73
69009--70604
799
2.0
796
91
0
2611
29
14
17
38
1.90
81184--81213
12
2.5
12
100
0
60
23
26
33
16
1.96

Tables:   1

The End!