Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015592.1 Corchorus olitorius cultivar O-4 contig15625, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49973

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1037--1176
70
2.0
70
97
0
262
33
12
3
50
1.57
6619--6683
32
2.0
32
93
0
112
21
13
20
44
1.86
10235--10284
23
2.3
23
89
6
77
24
6
16
54
1.64
15508--15555
21
2.3
20
80
13
53
77
0
18
4
0.93
16361--16417
20
2.6
21
75
13
53
45
8
14
31
1.75
16370--16409
20
2.0
20
90
0
62
50
5
12
32
1.62
17784--17834
16
3.2
16
78
10
68
35
37
17
9
1.83
17790--17852
23
2.7
21
75
18
54
33
34
17
14
1.90
17816--17859
23
1.9
23
90
9
72
31
36
15
15
1.90
17816--17865
23
2.2
23
85
7
66
34
38
14
14
1.85
18629--18696
16
4.4
15
73
12
57
39
35
16
8
1.79
18628--18698
31
2.3
32
75
7
74
40
33
16
8
1.79
22754--22829
29
2.6
29
81
4
82
40
35
10
13
1.79
30737--30918
30
5.8
32
79
8
135
31
14
18
35
1.90
30803--30912
30
3.6
30
95
2
193
30
16
20
33
1.94
40612--40683
31
2.3
31
75
17
78
26
4
8
61
1.43
40958--40991
8
4.4
8
92
7
61
38
0
0
61
0.96
40955--40991
13
2.9
13
88
11
51
37
0
0
62
0.96
40887--41218
165
2.0
167
97
1
632
43
5
4
47
1.45
41123--41156
8
4.4
8
92
7
61
38
0
0
61
0.96
41120--41156
13
2.9
13
88
11
51
37
0
0
62
0.96
41289--41339
23
2.2
23
89
0
75
27
49
19
3
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41330--41404
16
4.7
16
86
3
98
38
38
14
8
1.76
41330--41418
32
2.8
32
79
3
90
33
42
16
6
1.75
42692--42768
28
2.7
29
88
6
104
14
16
25
42
1.86

Tables:   1

The End!