Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015602.1 Corchorus olitorius cultivar O-4 contig15635, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30219

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--47
22
2.0
22
81
9
52
53
11
18
16
1.72
8496--8590
30
3.2
29
78
4
100
45
11
7
35
1.69
10283--10323
20
2.0
20
95
0
73
39
17
7
36
1.77
14139--14217
27
2.9
28
84
3
99
40
25
15
18
1.90
15361--15402
13
3.3
12
86
6
57
52
9
2
35
1.47
18306--18360
27
2.0
27
82
6
67
40
10
5
43
1.63
24945--25964
36
28.3
36
87
4
1185
24
16
11
46
1.80
24977--25069
18
5.2
18
65
7
55
25
13
10
49
1.75
25029--25087
18
3.3
18
67
9
57
25
13
13
47
1.79
24965--25964
73
13.8
72
87
5
1224
24
16
12
47
1.80
24945--25964
146
7.1
142
90
4
1347
24
16
11
46
1.80
29587--30187
134
4.5
134
90
1
886
34
10
13
41
1.79

Tables:   1

The End!