genome.fa.s15649.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015649.1 Corchorus olitorius cultivar O-4 contig15682, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170942

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2439	336	7.3	335	81	4	2896	35	16	15	32	1.90
1--2440	666	3.7	665	92	2	3995	35	16	15	32	1.90
2386--2511	63	2.0	63	98	0	243	38	3	19	38	1.70
2476--2516	19	2.2	20	79	20	52	39	0	14	46	1.45
16332--16375	2	22.0	2	100	0	88	50	0	0	50	1.00
21792--21838	18	2.6	18	80	10	51	6	19	6	68	1.34
22892--22942	27	1.9	27	92	4	86	11	33	7	47	1.69
49211--49285	37	2.0	37	100	0	150	26	18	20	34	1.95
53720--53745	13	2.0	13	100	0	52	53	7	23	15	1.67
59006--59041	18	2.0	18	94	0	63	41	19	22	16	1.90
65188--65245	28	2.1	28	96	0	107	36	3	18	41	1.68
70767--70814	24	2.0	24	91	0	78	20	37	10	31	1.87
73460--73486	3	9.0	3	100	0	54	66	0	0	33	0.92
79995--80108	58	2.0	57	96	1	210	34	12	9	43	1.75
81929--81970	2	21.0	2	100	0	84	50	0	0	50	1.00
85228--85257	15	2.0	15	100	0	60	60	6	13	20	1.55
109115--109145	2	15.5	2	100	0	62	0	48	0	51	1.00
110707--110746	22	1.9	22	90	10	66	47	22	10	20	1.79
120374--120523	75	2.0	75	86	2	212	39	15	23	22	1.91
123082--123301	90	2.4	90	81	4	248	21	24	16	36	1.94
128398--128461	30	2.1	30	85	5	85	31	15	14	39	1.87
130117--130146	16	1.9	15	93	6	51	53	20	0	26	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135878--136003	41	3.1	41	92	0	216	32	11	21	34	1.89
144790--144844	28	2.0	28	96	0	101	41	20	3	34	1.69
149035--149064	13	2.3	13	100	0	60	30	13	10	46	1.75
152525--152583	24	2.5	24	100	0	118	11	32	35	20	1.89
153316--153381	33	2.0	33	94	2	116	33	10	33	22	1.89
153496--153538	10	4.3	10	75	0	50	58	23	2	16	1.50
155650--155706	27	2.1	27	86	0	78	26	42	12	19	1.86
155816--155865	26	1.9	26	83	0	64	58	2	6	34	1.34
156916--162502	332	16.9	327	79	7	5022	32	13	16	37	1.88
156943--162502	994	5.6	980	79	8	4860	32	13	16	37	1.88
163894--163989	39	2.4	41	92	5	160	12	22	30	34	1.91
166789--170452	329	11.0	325	79	8	3133	38	14	13	33	1.86

Tables:   1

The End!