genome.fa.s15670.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015670.1 Corchorus olitorius cultivar O-4 contig15703, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85473

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1269	330	3.8	323	79	8	1279	33	14	14	37	1.86
2794--2849	25	2.2	25	93	0	94	25	23	26	25	2.00
6423--8602	332	6.5	329	78	6	1914	36	15	13	33	1.88
6426--8364	990	2.0	977	81	5	2177	36	15	14	33	1.89
9787--11646	330	5.7	328	77	9	1497	36	15	13	33	1.87
12093--12193	42	2.4	42	100	0	202	35	10	7	45	1.69
13472--13515	19	2.3	19	80	7	54	50	0	38	11	1.39
16951--17031	33	2.4	34	85	4	119	29	17	8	44	1.78
16959--17030	33	2.2	33	97	0	135	30	19	8	41	1.81
18297--18331	11	3.2	11	91	0	61	80	17	2	0	0.84
21886--21915	3	10.0	3	100	0	60	0	66	0	33	0.92
23095--23135	22	1.9	21	95	5	73	29	9	17	43	1.80
24225--24269	22	2.0	22	100	0	90	13	31	17	37	1.89
27360--27400	22	1.9	21	90	5	64	29	14	14	41	1.86
27948--28054	54	2.0	54	92	3	180	47	14	11	27	1.77
39691--39750	29	2.1	29	87	0	84	21	8	10	60	1.55
40282--40682	208	1.9	205	97	1	757	44	8	10	36	1.70
40806--40867	17	3.4	17	72	20	61	33	4	11	50	1.60
40809--40873	22	3.2	22	64	28	61	33	6	9	50	1.59
40792--40911	39	3.1	39	96	1	213	36	4	9	50	1.54
41435--41463	7	4.1	7	100	0	58	55	13	13	17	1.70
44231--44273	20	2.2	19	84	12	52	2	23	11	62	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51974--52091	57	2.0	58	93	3	202	47	11	10	30	1.73
60117--60667	273	2.0	273	99	0	1084	36	16	23	22	1.94
68887--68986	22	4.3	23	72	20	73	24	11	2	63	1.38
68911--68962	27	1.9	27	88	7	79	23	7	1	67	1.27
68971--69072	8	12.6	8	71	6	62	24	14	0	59	1.41
68968--69031	24	2.7	24	85	0	92	28	20	0	51	1.47
69020--69085	20	3.2	20	77	10	80	19	6	1	72	1.13
69037--69080	16	2.8	16	82	3	54	18	6	2	72	1.17
71562--71587	13	2.0	13	100	0	52	15	0	30	53	1.42
77073--77110	14	2.7	14	100	0	76	15	15	13	55	1.70
78979--79427	224	2.0	224	90	0	709	33	22	10	34	1.87
83034--83079	19	2.4	19	81	0	56	23	36	28	10	1.89

Tables:   1

The End!