Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015763.1 Corchorus olitorius cultivar O-4 contig15796, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74579

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1560--1585
2
13.0
2
100
0
52
0
0
50
50
1.00
1971--2088
57
2.1
57
84
4
150
40
22
5
31
1.76
2465--2507
10
4.2
10
82
5
50
20
0
4
74
1.00
2463--2502
20
2.0
21
90
5
64
22
0
2
75
0.93
3731--3880
75
2.0
75
100
0
300
21
16
24
38
1.92
11033--11122
45
2.0
46
84
2
119
26
10
21
42
1.84
12933--13075
47
3.0
47
88
7
193
44
21
13
20
1.86
12934--13011
24
3.3
24
68
28
76
47
20
15
16
1.83
12980--13138
48
2.9
59
77
19
214
42
22
14
20
1.88
12951--13104
48
3.2
48
88
6
190
42
22
14
21
1.88
13219--13261
2
21.5
2
95
0
77
51
2
0
46
1.13
18136--18186
19
2.7
19
77
14
61
50
1
0
47
1.12
32832--32859
14
2.0
14
100
0
56
42
7
7
42
1.59
37249--37278
2
15.0
2
92
0
51
0
53
0
46
1.00
44099--44125
6
4.5
6
100
0
54
51
0
33
14
1.43
52391--52545
22
7.1
22
73
5
118
37
19
11
31
1.88
52557--52609
22
2.4
22
84
6
63
33
20
3
41
1.70
52675--52864
22
8.6
22
68
11
84
34
12
10
42
1.77
53643--53683
3
13.7
3
100
0
82
68
0
0
31
0.90
54037--54076
15
2.5
17
88
8
57
62
2
0
35
1.09
54575--54615
2
20.0
2
95
5
73
48
0
2
48
1.14
54617--54641
13
1.9
13
100
0
50
56
0
20
24
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58561--58586
9
2.9
9
100
0
52
46
34
19
0
1.50
59460--59502
7
6.1
7
100
0
86
27
13
30
27
1.95
67679--67726
25
1.9
25
95
0
87
33
27
18
20
1.96
68275--68314
20
2.0
20
100
0
80
30
25
15
30
1.95
68575--68612
1
38.0
1
100
0
76
0
0
0
100
0.00

Tables:   1

The End!