genome.fa.s15840.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015840.1 Corchorus olitorius cultivar O-4 contig15873, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95262

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1238--1299	21	3.2	21	60	21	53	35	14	4	45	1.66
1235--1305	37	1.9	37	100	0	142	33	12	4	49	1.60
3205--6012	31	96.5	31	86	8	3299	28	16	21	33	1.95
6314--6339	2	13.0	2	100	0	52	50	0	0	50	1.00
6236--6339	53	2.0	53	96	3	192	46	3	9	40	1.55
7678--11016	331	10.1	330	77	6	2972	35	16	14	33	1.89
10226--10258	16	2.2	15	89	10	50	21	6	3	69	1.24
11572--11637	27	2.4	27	77	7	71	42	3	7	46	1.47
11560--11741	96	1.9	96	88	3	276	52	3	7	36	1.47
14186--14344	31	5.3	31	69	14	107	37	13	17	31	1.88
14196--14346	60	2.5	60	86	2	205	37	15	16	31	1.90
14391--14490	31	3.3	31	73	5	105	27	13	17	43	1.85
14418--14517	29	3.4	29	73	10	103	28	16	18	38	1.91
14389--14525	60	2.3	60	92	0	229	28	15	16	40	1.88
14507--14547	20	2.0	20	90	0	64	24	19	19	36	1.95
16015--16232	108	2.0	108	100	0	436	20	20	16	43	1.88
18561--18955	196	2.0	196	91	0	637	24	26	19	29	1.98
21547--21591	8	5.8	8	84	5	56	24	20	0	55	1.43
21684--21738	28	2.0	28	85	7	76	20	9	5	65	1.41
22554--22589	2	18.0	2	100	0	72	50	0	0	50	1.00
23041--24214	637	1.8	631	80	7	1397	33	13	16	36	1.88
23643--24544	331	2.7	321	78	9	899	33	14	16	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26198--26244	17	2.8	17	86	0	67	34	21	23	21	1.97
26621--27326	360	2.0	358	85	3	963	34	14	15	35	1.87
27358--34517	653	10.9	653	83	5	8518	34	14	15	35	1.88
38126--38190	29	2.2	28	82	12	78	21	18	16	43	1.88
50843--50881	20	2.0	20	84	0	51	71	2	2	23	1.10
52516--52557	21	2.0	21	95	0	75	16	14	21	47	1.82
67060--67091	11	2.6	13	80	19	50	56	0	0	43	0.99
67065--67096	11	2.9	11	100	0	64	53	0	0	46	1.00
69209--69237	9	3.2	9	100	0	58	55	0	0	44	0.99
74593--74623	15	2.1	15	100	0	62	32	32	0	35	1.58
83984--84117	31	4.3	31	88	0	187	21	17	26	35	1.95
84478--84522	17	2.5	19	86	13	69	46	0	0	53	1.00
85596--85658	31	2.0	31	84	6	83	36	19	14	30	1.91
86268--86336	3	23.0	3	100	0	138	66	0	0	33	0.92
92035--92096	25	2.6	24	85	10	74	58	4	6	30	1.44

Tables:   1

The End!