Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015936.1 Corchorus olitorius cultivar O-4 contig15969, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57370

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1059--1106
17
2.8
17
93
0
87
14
27
27
31
1.95
11453--11509
29
2.0
29
82
6
71
40
3
19
36
1.69
13168--13234
27
2.4
27
72
2
62
34
4
11
49
1.60
18700--18746
15
3.1
15
78
3
58
65
8
8
17
1.44
20830--20938
38
2.9
38
88
1
166
44
12
4
37
1.63
21064--21090
12
2.2
12
100
0
54
92
7
0
0
0.38
23634--23998
41
8.6
41
73
17
284
22
9
27
40
1.84
23625--23999
84
4.4
86
87
3
521
22
9
26
40
1.85
27043--27114
35
2.1
35
86
0
99
27
1
30
40
1.65
27408--27479
35
2.1
35
86
0
99
27
1
33
37
1.66
28304--28448
22
6.6
22
76
4
96
41
7
18
32
1.79
28325--28443
21
5.5
21
79
6
94
42
8
16
31
1.78
28466--28495
14
2.1
14
93
0
51
40
10
13
36
1.78
28319--28481
22
7.5
22
72
12
86
39
7
17
34
1.79
35901--36041
75
1.9
74
80
12
164
40
16
23
19
1.91
43080--43134
27
2.2
24
83
9
65
56
9
5
29
1.53
43161--43335
51
3.4
52
90
3
280
28
17
20
34
1.94
47926--47963
20
1.9
20
88
0
58
0
7
34
57
1.28
50043--50467
213
2.0
213
99
0
832
39
16
4
39
1.69
54222--54259
20
1.9
20
94
0
67
44
15
21
18
1.86

Tables:   1

The End!