Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015987.1 Corchorus olitorius cultivar O-4 contig16020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104042

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2486--2515
15
2.0
15
100
0
60
13
13
13
60
1.60
4610--4666
29
2.0
29
82
6
71
50
7
19
22
1.71
10659--10703
3
15.0
3
100
0
90
66
0
0
33
0.92
11308--11359
7
7.6
7
83
16
65
84
15
0
0
0.62
11305--11362
5
11.6
5
85
14
68
82
17
0
0
0.66
11308--11349
12
3.3
13
87
12
61
85
14
0
0
0.59
11361--11401
3
13.3
3
94
5
73
68
0
31
0
0.90
11399--11424
2
13.0
2
100
0
52
50
0
50
0
1.00
20867--20911
22
2.0
22
100
0
90
51
0
0
48
1.00
21305--21421
57
2.0
58
96
1
218
33
23
1
41
1.65
23069--23098
13
2.3
13
94
0
51
66
0
0
33
0.92
25523--25585
32
2.1
31
88
8
94
25
19
19
36
1.94
47224--47251
2
14.0
2
100
0
56
50
0
0
50
1.00
51655--51711
24
2.4
23
85
8
71
26
1
12
59
1.43
67739--67862
65
1.9
65
84
0
167
27
16
14
41
1.88
88099--88131
13
2.6
13
90
4
50
0
21
0
78
0.75
93699--93723
3
8.3
3
100
0
50
32
0
0
68
0.90
93843--93879
2
18.5
2
94
0
65
51
0
0
48
1.00
96450--96481
2
16.0
2
100
0
64
50
0
0
50
1.00
97830--97857
14
2.0
14
100
0
56
64
0
28
7
1.20
98753--100202
333
4.3
330
85
5
1754
36
16
15
31
1.90
98753--103939
669
7.7
668
75
11
2369
37
16
15
31
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100518--100553
11
3.3
11
84
0
54
77
16
5
0
0.94
100602--104005
660
5.1
656
83
5
3915
37
16
15
31
1.90
100602--104005
986
3.4
985
83
5
4242
37
16
15
31
1.90

Tables:   1

The End!