Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016011.1 Corchorus olitorius cultivar O-4 contig16044, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70342

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1616--1644
14
2.1
14
100
0
58
13
20
13
51
1.75
14831--14881
24
2.1
24
85
7
68
41
7
0
50
1.31
15106--15138
3
11.0
3
100
0
66
66
0
0
33
0.92
15920--15969
12
4.2
12
78
14
50
48
8
2
42
1.44
16085--16128
20
2.2
20
87
4
61
59
6
4
29
1.44
20110--20160
19
2.7
19
72
24
54
49
1
0
49
1.12
20514--20539
13
2.0
13
100
0
52
53
30
0
15
1.42
29047--29089
5
8.6
5
92
7
70
58
0
0
41
0.98
34090--34134
12
3.8
12
84
0
63
8
35
40
15
1.79
34086--34140
24
2.3
24
96
0
101
7
36
41
14
1.74
48770--49252
40
12.1
40
91
0
651
30
19
30
19
1.97
53446--53549
41
2.5
41
85
3
147
26
16
23
33
1.95
53662--53740
40
2.0
40
97
2
151
22
20
8
48
1.77
53716--53779
23
2.6
25
80
12
78
21
18
7
51
1.71
53663--53760
39
2.5
40
88
1
117
21
21
7
50
1.72
53760--53855
28
3.0
34
77
22
134
25
11
18
44
1.83
56318--57083
222
3.5
222
93
0
1309
35
7
20
36
1.81
57560--58903
222
6.0
223
88
2
1834
35
20
7
36
1.81
57560--59513
448
4.5
442
85
5
2548
35
20
7
36
1.81
58700--59102
195
2.1
196
87
3
578
35
19
8
36
1.82
58906--59513
218
2.8
216
92
1
1002
34
21
8
35
1.83
58906--59513
217
2.8
217
92
0
1002
34
21
8
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66785--66855
38
1.9
36
86
11
99
36
8
9
45
1.68
67609--67634
11
2.4
11
100
0
52
73
0
7
19
1.07

Tables:   1

The End!