Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016013.1 Corchorus olitorius cultivar O-4 contig16046, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26427

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
534--605
12
5.9
12
90
4
101
26
15
16
41
1.88
641--712
35
2.1
35
94
0
126
33
25
20
20
1.97
1708--1738
14
2.2
14
94
0
53
77
12
9
0
0.99
1842--1880
20
1.9
20
89
5
60
20
5
2
71
1.17
2479--4042
154
10.2
154
87
1
2138
42
18
16
22
1.88
2511--4031
767
2.0
766
88
1
2251
43
18
16
22
1.88
4094--4186
27
3.4
27
75
11
93
16
19
24
39
1.91
11180--11215
19
1.9
18
88
5
54
41
2
22
33
1.68
12453--12519
34
1.9
35
82
11
84
20
10
5
62
1.48
13806--13839
17
2.0
17
88
0
50
41
26
8
23
1.83

Tables:   1

The End!