Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016054.1 Corchorus olitorius cultivar O-4 contig16087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65140

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1736--1772
15
2.5
16
83
16
53
0
32
5
62
1.18
10060--10090
3
10.3
3
100
0
62
35
32
32
0
1.58
10658--10985
44
7.3
44
84
9
351
37
16
9
36
1.82
10684--10737
28
2.0
27
85
7
74
33
12
9
44
1.75
10343--10986
22
28.9
22
69
14
274
36
15
9
38
1.79
11203--11536
167
2.0
168
87
8
495
44
8
10
36
1.70
16217--16267
12
4.2
12
75
9
50
21
29
25
23
1.99
18417--18949
265
2.0
266
90
3
840
29
13
20
36
1.91
22402--22543
67
2.1
67
93
1
239
18
1
25
54
1.51
22893--22932
19
2.1
19
100
0
80
32
0
15
52
1.43
35556--35741
38
4.9
38
92
1
293
23
17
35
23
1.95
35771--35838
6
11.3
6
95
0
109
20
0
30
48
1.50
39819--39858
13
3.2
13
89
3
55
75
7
7
10
1.20
45740--45810
35
2.0
35
97
0
133
29
19
33
16
1.94
60005--60312
152
2.0
152
98
0
591
27
21
12
37
1.90
65044--65092
22
2.2
22
81
0
53
12
30
38
18
1.87

Tables:   1

The End!