Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016058.1 Corchorus olitorius cultivar O-4 contig16091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68269

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11664--12005
167
2.0
168
87
3
483
52
18
12
16
1.75
13779--13816
18
2.1
18
90
0
58
18
7
23
50
1.73
17222--17262
18
2.3
19
80
20
52
9
14
7
68
1.39
21379--21418
20
2.0
20
85
9
55
12
7
15
65
1.47
21440--21477
20
1.9
20
89
10
60
50
7
13
28
1.69
21626--21672
20
2.4
21
82
10
55
21
14
27
36
1.93
28813--28880
21
3.2
21
76
2
73
20
48
20
10
1.78
32121--32149
15
1.9
15
100
0
58
13
6
6
72
1.26
34285--34596
69
4.5
69
93
2
502
28
16
29
25
1.97
41171--41243
21
3.4
21
75
1
65
21
46
19
12
1.82
50360--50392
16
2.1
16
94
0
57
39
12
9
39
1.74
50407--50448
19
2.3
19
80
12
52
9
14
7
69
1.37
52539--52943
129
3.1
130
93
1
659
35
13
17
34
1.88
56998--57029
13
2.5
13
94
0
55
25
15
18
40
1.90
58239--58266
14
2.0
14
100
0
56
7
14
7
71
1.29
59365--59557
57
3.3
57
68
18
162
31
7
25
35
1.84
59340--59557
119
1.8
119
90
2
348
32
7
24
35
1.83
60195--60241
21
2.3
20
81
3
58
51
8
4
36
1.52
60632--61605
440
2.2
440
88
2
1460
26
13
17
42
1.86

Tables:   1

The End!