Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016063.1 Corchorus olitorius cultivar O-4 contig16096, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25113

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
511--552
2
21.0
2
95
0
75
47
0
2
50
1.14
1332--1379
19
2.5
20
80
12
57
52
2
0
45
1.12
6024--6059
2
18.0
2
100
0
72
50
0
0
50
1.00
14086--14152
23
3.2
23
60
27
58
50
16
13
19
1.77
14081--14189
34
3.0
35
89
10
175
51
14
13
20
1.76
14473--14608
68
2.0
68
92
0
227
36
19
10
33
1.86
15313--15339
12
2.2
12
100
0
54
51
14
7
25
1.68
16600--16626
13
2.1
13
100
0
54
44
0
29
25
1.54
20478--20840
181
2.0
181
100
0
726
24
18
15
40
1.90
23030--23385
58
5.9
57
71
15
157
31
19
5
43
1.74
23094--23242
69
2.2
69
87
2
221
33
18
2
44
1.64
23173--23470
116
2.6
116
77
10
283
31
18
5
45
1.71
23161--23733
56
10.1
54
81
10
504
30
17
5
46
1.71
23374--23733
114
3.2
112
91
3
575
29
17
5
47
1.70

Tables:   1

The End!