genome.fa.s16099.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016099.1 Corchorus olitorius cultivar O-4 contig16132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71051

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1774--1822	22	2.1	24	85	7	66	16	40	32	10	1.82
6963--7008	24	1.9	24	90	0	74	28	36	15	19	1.92
10025--10067	21	2.0	21	82	8	52	69	4	2	23	1.18
35105--35175	29	2.4	29	86	6	90	45	11	19	23	1.83
35101--35175	30	2.5	30	82	6	100	42	10	24	22	1.85
35839--35918	42	2.0	41	95	5	144	25	2	38	33	1.69
40134--40318	48	4.0	47	78	9	161	23	24	5	46	1.73
40157--40318	43	3.6	42	78	13	146	23	24	5	46	1.73
51025--51425	33	12.3	33	76	8	385	4	28	7	59	1.46
51034--51243	102	2.1	99	87	5	298	4	29	5	60	1.38
51365--51425	19	3.5	19	65	21	51	4	29	9	55	1.53
51713--51737	6	4.2	6	100	0	50	0	32	0	68	0.90
53476--53503	2	14.0	2	100	0	56	50	0	0	50	1.00
53761--53802	13	3.5	13	75	18	54	26	2	28	42	1.67
53758--53811	23	2.3	23	100	0	108	25	3	31	38	1.74
53867--53918	23	2.3	22	83	3	68	5	40	0	53	1.25
54338--54379	19	2.3	18	84	8	57	35	2	0	61	1.09
56319--56461	72	2.0	72	97	0	268	32	4	17	44	1.70
62088--62148	30	2.0	30	96	0	113	22	0	27	49	1.50
63239--63301	32	2.0	32	93	0	108	23	15	15	44	1.86
64977--65029	19	2.6	21	77	20	58	41	0	20	37	1.53
64988--65027	18	2.2	19	90	4	64	45	0	22	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68887--68947	26	2.2	28	82	5	81	21	19	21	37	1.94

Tables:   1

The End!