Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016234.1 Corchorus olitorius cultivar O-4 contig16267, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61430

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
335--402
34
2.0
34
100
0
136
32
17
8
41
1.80
943--1009
30
2.2
30
79
10
75
44
11
10
32
1.75
4809--4847
11
3.5
11
82
0
51
51
0
0
48
1.00
7530--7575
24
2.0
23
91
4
74
21
13
17
47
1.81
7530--7571
12
3.5
12
75
12
50
23
11
19
45
1.83
8823--8865
20
2.2
19
91
4
68
2
48
2
46
1.27
10123--10186
33
2.0
32
93
3
110
21
7
4
65
1.37
11893--11947
18
3.4
15
77
22
58
23
3
16
56
1.56
13020--13047
12
2.3
12
100
0
56
50
32
17
0
1.47
15082--15212
67
2.0
67
100
0
262
35
6
16
40
1.76
15298--15372
29
2.8
28
92
8
120
66
13
2
17
1.36
16667--16708
22
1.9
22
90
0
66
40
26
19
14
1.89
17277--17310
16
2.1
16
88
0
50
41
35
17
5
1.74
18422--18627
105
2.0
102
89
4
315
50
1
12
34
1.49
18857--18933
29
2.6
30
81
6
93
33
25
10
29
1.89
19968--19996
2
14.5
2
100
0
58
51
0
0
48
1.00
30462--30486
3
8.3
3
100
0
50
68
0
0
32
0.90
33117--33148
1
32.0
1
100
0
64
100
0
0
0
0.00
36014--36084
37
1.9
37
94
2
126
54
4
16
23
1.59
40098--40132
17
2.1
17
100
0
70
34
25
11
28
1.91
40683--40783
53
1.9
53
97
0
193
37
31
9
20
1.86
40765--40801
19
1.9
19
100
0
74
32
43
5
18
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44425--44455
16
1.9
16
93
0
53
48
3
0
48
1.17
44743--44775
15
2.2
15
94
0
57
45
30
6
18
1.73
45883--45930
22
2.2
22
100
0
96
29
14
4
52
1.60
46264--46294
2
16.0
2
93
6
55
51
0
0
48
1.00
50676--50708
2
17.0
2
93
6
59
51
0
0
48
1.00
60376--60635
128
2.0
129
87
6
375
50
1
10
37
1.48

Tables:   1

The End!