Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016324.1 Corchorus olitorius cultivar O-4 contig16357, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78039

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2199--2305
56
1.9
56
90
0
169
28
13
16
42
1.86
4969--5017
17
2.9
16
82
11
62
24
24
18
32
1.97
14191--14225
13
2.7
13
95
0
61
0
0
14
85
0.59
14189--14224
12
2.9
12
88
8
54
0
0
16
83
0.65
15782--15806
12
2.1
12
100
0
50
16
8
40
36
1.77
30890--30919
6
5.0
6
100
0
60
16
16
33
33
1.92
34656--34707
18
2.9
18
80
5
61
7
48
23
21
1.75
41942--41977
19
1.9
18
88
5
54
66
0
0
33
0.92
43690--43720
11
2.8
11
95
0
53
38
9
16
35
1.81
45265--45373
54
2.0
54
100
0
218
32
16
11
40
1.83
54946--55151
25
8.3
25
67
17
90
25
9
0
64
1.27
55046--55148
44
2.3
45
91
3
163
26
8
0
64
1.29
55044--55154
27
4.2
27
69
17
81
25
8
0
65
1.25
55115--55157
19
2.3
19
83
0
59
27
2
2
67
1.15
54958--55154
4
50.0
4
65
18
67
26
8
0
64
1.26
55225--55260
14
2.5
15
86
4
56
25
5
0
69
1.10
65687--65734
25
1.9
25
83
8
62
41
0
0
58
0.98
72169--72276
54
2.0
54
94
0
189
35
26
12
25
1.92
73662--73687
12
2.2
12
100
0
52
50
0
7
42
1.31
75301--78039
329
8.3
327
77
8
2293
33
15
16
35
1.90

Tables:   1

The End!