Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016337.1 Corchorus olitorius cultivar O-4 contig16370, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12215

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
795--834
20
2.1
18
86
9
53
32
2
10
55
1.47
1890--1922
14
2.3
14
94
5
57
87
0
12
0
0.53
2433--2492
20
3.4
20
66
33
64
25
0
20
55
1.44
2433--2493
32
1.9
32
100
0
122
26
0
19
54
1.45
2546--2606
30
2.0
30
100
0
122
32
3
18
45
1.65
2732--2965
121
2.0
112
91
7
378
38
13
8
40
1.74
2973--3016
16
2.6
16
80
20
54
6
31
0
61
1.22
3022--3075
27
2.0
27
96
0
99
31
20
3
44
1.69
4454--4589
70
1.9
70
100
0
272
43
13
13
29
1.82
5193--5250
20
3.2
20
62
23
54
56
8
8
25
1.58
5190--5262
35
2.1
35
97
0
137
52
8
9
30
1.63
9129--9155
2
13.5
2
100
0
54
0
51
0
48
1.00
9745--9772
13
2.2
13
100
0
56
39
0
14
46
1.44
11056--11132
40
1.9
40
86
0
109
36
7
22
33
1.83
10720--11469
373
2.0
375
88
2
1123
32
16
17
34
1.92
11111--12192
334
3.3
333
89
3
1596
32
17
16
33
1.92

Tables:   1

The End!