genome.fa.s16365.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016365.1 Corchorus olitorius cultivar O-4 contig16398, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187455

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--4042	656	6.2	652	85	4	4131	34	17	14	33	1.90
1--4042	988	4.1	963	80	7	3892	34	17	14	33	1.90
7499--7612	57	2.0	57	93	3	194	28	12	21	37	1.89
8601--8633	6	5.7	6	89	3	50	54	3	42	0	1.15
18542--18594	22	2.3	23	77	6	63	52	7	7	32	1.58
21721--21778	21	2.9	19	79	5	62	37	10	20	31	1.86
27131--27279	31	4.8	31	83	4	158	16	22	25	36	1.94
27153--27290	61	2.3	60	82	5	179	15	23	26	34	1.95
35194--35229	14	2.6	13	91	8	54	50	0	0	50	1.00
41128--41164	19	2.0	19	89	5	58	64	0	0	35	0.94
73526--73689	24	6.8	24	98	0	292	28	32	28	10	1.90
74378--74443	32	2.1	32	100	0	132	25	21	21	31	1.98
76164--76194	12	2.6	12	100	0	62	0	29	9	61	1.28
83047--83173	59	2.1	60	86	4	177	36	17	17	29	1.93
83181--83219	2	19.5	2	100	0	78	51	0	0	48	1.00
88317--89848	320	4.8	319	81	6	1680	35	16	15	32	1.90
88361--89823	642	2.3	624	81	8	1680	34	16	15	32	1.91
89909--91009	323	3.3	329	87	5	1455	32	17	14	35	1.91
91144--91953	320	2.5	325	83	4	902	34	16	14	34	1.89
90243--92454	887	2.5	885	94	1	3936	34	16	14	34	1.89
92797--97624	641	7.5	640	83	6	5418	35	16	14	33	1.89
92797--97624	320	15.1	322	83	5	5525	35	16	14	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97573--98197	224	2.8	222	86	4	880	35	16	13	34	1.88
98257--98346	15	5.9	15	66	19	60	33	20	15	31	1.93
98297--101318	27	112.0	25	82	9	2799	33	22	12	31	1.91
98271--101326	79	37.7	79	82	8	3254	33	22	12	31	1.91
98271--101318	53	56.4	53	82	9	3418	34	22	12	31	1.91
100091--100202	15	7.3	15	64	16	59	33	20	15	30	1.93
100581--100619	17	2.3	17	95	0	69	33	20	12	33	1.91
106079--106118	2	18.5	2	85	14	53	47	7	0	45	1.31
106062--106117	7	8.3	7	96	2	80	48	10	0	41	1.38
106516--107328	321	2.5	318	83	6	962	34	16	15	33	1.91
107792--107851	29	2.1	29	81	6	68	61	6	8	23	1.48
114359--114407	25	2.0	25	95	0	89	14	32	18	34	1.91
115993--116071	31	2.6	30	86	8	97	15	20	27	36	1.92
140432--140486	28	2.0	28	100	0	110	14	34	14	36	1.87
166733--166807	29	2.6	29	80	6	89	46	13	18	21	1.83
169701--169753	26	2.0	26	82	10	63	52	1	13	32	1.51
181950--182010	26	2.2	27	80	19	72	8	14	0	77	0.99
181962--182015	22	2.4	23	82	14	69	5	16	0	77	0.94
187425--187455	15	2.0	15	93	6	53	70	0	29	0	0.87

Tables:   1

The End!