Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016373.1 Corchorus olitorius cultivar O-4 contig16406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85310

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4512--4538
12
2.2
12
100
0
54
70
14
0
14
1.17
4936--4995
31
1.9
31
86
0
84
31
3
13
51
1.57
12888--13117
77
3.0
77
96
0
424
26
24
19
30
1.98
29932--29958
13
2.1
13
100
0
54
25
22
7
44
1.79
30816--31916
324
3.4
319
82
6
1244
32
14
16
36
1.89
32099--34175
320
6.4
320
78
8
1968
33
14
16
35
1.89
32099--34175
636
3.2
639
82
7
2228
33
14
16
35
1.89
35392--40024
337
13.7
338
91
2
7091
31
14
18
35
1.91
35392--40024
675
6.9
675
90
2
7053
31
14
18
35
1.91
40077--41431
334
4.1
331
77
6
1274
33
15
15
35
1.90
42775--45667
322
8.9
318
80
8
2851
33
14
16
36
1.89
41532--45679
979
4.3
973
79
8
4101
33
14
16
35
1.89
58938--58981
2
22.0
2
100
0
88
50
0
50
0
1.00
64338--64899
143
4.0
142
88
5
750
33
14
14
36
1.88
65004--65180
68
2.6
68
84
3
205
39
15
12
31
1.86
67439--67487
17
2.9
16
75
6
53
79
14
6
0
0.91
67439--67495
6
9.8
6
85
11
57
78
14
7
0
0.94
67445--67503
6
9.8
6
84
12
59
74
16
8
0
1.05
71475--71595
30
4.0
30
86
2
163
23
37
9
28
1.87

Tables:   1

The End!