Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016381.1 Corchorus olitorius cultivar O-4 contig16414, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42971

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5621--5664
22
2.0
22
82
8
54
38
18
6
36
1.77
15013--15093
41
2.0
41
100
0
162
9
34
9
45
1.71
15890--15966
39
2.0
40
94
2
138
51
9
2
36
1.47
16072--16479
199
2.0
204
92
3
684
35
10
8
45
1.69
16993--17062
36
1.9
36
91
0
113
60
8
10
21
1.55
18073--18655
295
2.0
295
98
0
1132
33
11
14
40
1.81
26393--26484
46
2.0
46
100
0
184
36
23
8
30
1.85
30379--30442
21
3.1
21
82
8
78
35
10
20
32
1.87
31362--33729
322
7.3
322
80
7
2372
33
15
17
34
1.91
31362--33741
979
2.4
974
86
4
3202
33
15
16
34
1.91
33914--39334
331
16.7
322
75
10
4144
32
15
16
35
1.90
33914--40395
978
6.7
974
81
8
6407
32
15
16
35
1.90
37605--39336
655
2.6
653
93
1
2918
32
14
16
35
1.90
40782--42944
655
3.3
633
78
8
2096
33
15
15
35
1.89
40784--42930
968
2.2
967
87
4
3102
33
15
15
35
1.90
42938--42970
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!