genome.fa.s16383.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016383.1 Corchorus olitorius cultivar O-4 contig16416, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76600

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621--717	51	1.9	51	91	4	160	29	9	13	47	1.74
1583--2109	268	2.0	267	88	1	779	27	15	18	38	1.91
2292--2321	15	2.0	15	100	0	60	46	33	0	20	1.51
1851--2742	322	2.8	309	84	7	1191	27	15	17	39	1.89
2476--3009	268	2.0	267	89	1	818	27	16	18	37	1.92
2167--3791	577	2.8	582	83	9	1871	27	16	17	38	1.91
2746--3514	301	2.5	305	89	3	1131	27	16	18	38	1.91
4000--4076	29	2.7	29	95	0	136	38	5	15	40	1.70
14359--14388	13	2.3	13	94	0	51	0	10	0	90	0.47
15165--15228	21	3.2	20	80	8	76	35	12	20	31	1.90
27153--27274	25	4.6	25	82	15	156	13	0	37	48	1.43
27144--27260	57	2.1	57	100	0	234	14	0	38	47	1.45
27275--27324	25	2.0	25	100	0	100	36	20	32	12	1.89
29287--29311	13	1.9	13	100	0	50	32	12	16	40	1.84
33894--34008	60	1.9	60	82	3	142	40	13	10	36	1.78
34647--34688	19	2.2	19	87	8	59	23	7	9	59	1.53
35222--36160	331	2.8	329	81	7	1022	33	14	14	37	1.86
36913--37807	320	2.7	330	80	6	1070	34	13	16	35	1.88
36913--40712	618	5.9	624	75	12	2735	33	14	16	35	1.89
62652--62726	33	2.3	33	100	0	150	29	14	20	36	1.92
71047--71086	20	2.0	20	85	5	53	55	5	5	35	1.44
71158--71281	62	2.0	60	93	4	214	37	7	18	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71331--75287	324	12.3	324	86	3	5253	35	14	16	33	1.89
71318--75295	969	4.1	965	87	3	5505	35	13	16	34	1.89
75298--76600	323	4.1	323	84	6	1718	34	13	17	34	1.89

Tables:   1

The End!