Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016398.1 Corchorus olitorius cultivar O-4 contig16431, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75581

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1288--1312
4
6.2
4
100
0
50
0
24
0
76
0.80
13851--14146
33
8.7
33
81
4
268
6
36
23
32
1.81
13842--14120
69
4.0
69
79
6
278
7
37
23
31
1.82
26771--26832
30
2.1
30
93
0
106
25
25
4
43
1.74
40962--40991
2
15.5
2
93
6
53
50
0
0
50
1.00
67529--67556
14
2.0
14
100
0
56
21
7
21
50
1.72
69847--70238
211
1.9
210
84
5
531
35
14
14
34
1.87
70056--72196
654
3.3
653
79
8
1987
35
16
15
32
1.90
70058--72269
323
6.8
320
79
8
2108
35
16
15
32
1.90
72011--72762
261
2.9
260
78
6
791
34
16
14
33
1.90
72531--73816
324
3.9
324
86
2
1697
35
16
15
32
1.89
73605--73982
209
1.8
209
92
0
639
34
16
18
30
1.94
73284--74303
530
1.9
529
87
1
1508
35
15
16
31
1.91
73813--75559
321
5.4
322
85
2
2233
36
15
14
33
1.88
73813--75543
323
5.4
323
86
2
2234
35
15
14
33
1.88
73813--75544
647
2.7
644
88
2
2453
35
15
14
33
1.88

Tables:   1

The End!