genome.fa.s16403.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016403.1 Corchorus olitorius cultivar O-4 contig16436, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146608

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128--929	325	2.4	324	83	4	934	35	15	15	34	1.89
988--2187	316	3.7	317	81	6	1300	32	14	17	35	1.90
14549--14683	65	2.1	66	91	1	218	27	21	13	37	1.91
15335--15471	63	2.2	61	81	12	172	34	16	19	29	1.94
15432--15501	29	2.4	29	100	0	140	30	21	21	27	1.98
15577--15734	61	2.6	60	84	5	212	29	16	16	37	1.91
31360--31387	3	9.3	3	100	0	56	67	0	0	32	0.91
32665--32704	20	2.0	20	100	0	80	45	10	10	35	1.71
39633--39716	38	2.2	38	100	0	168	44	25	20	10	1.83
53661--53713	28	2.0	27	92	7	90	49	7	7	35	1.60
53749--53774	11	2.4	11	100	0	52	46	0	7	46	1.31
53948--55030	314	3.4	312	77	9	1076	37	15	13	33	1.87
68670--69287	313	2.0	313	99	0	1218	37	20	19	22	1.94
78828--78859	6	5.3	6	100	0	64	0	18	0	81	0.70
85700--85730	11	2.8	11	95	0	53	87	0	12	0	0.55
87815--91945	331	12.5	329	78	7	3735	37	15	14	32	1.88
87815--91945	668	6.2	662	80	8	3736	37	15	14	32	1.88
87815--91945	994	4.2	991	79	8	3937	37	15	14	32	1.88
92335--92364	15	1.9	16	93	6	53	53	3	0	43	1.17
96750--96878	22	5.8	22	69	9	73	40	11	9	38	1.74
96750--96919	22	7.6	21	72	15	71	35	13	10	40	1.78
97595--97645	21	2.3	22	83	10	68	45	0	11	43	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104477--105548	321	3.3	326	81	7	1242	32	13	17	36	1.90
105974--107712	329	5.3	332	81	5	1998	32	14	17	35	1.90
107840--114885	331	21.5	330	76	9	6033	32	14	17	35	1.90
109668--109741	29	2.6	29	97	0	139	29	14	20	35	1.93
109726--109833	51	2.1	51	96	0	198	35	12	20	32	1.89
109915--114885	980	5.1	982	91	2	7721	32	14	16	36	1.89
120587--120664	29	2.6	30	78	10	88	43	14	23	19	1.87
126940--127027	45	2.0	45	86	0	122	32	20	28	18	1.96
142058--142094	7	5.3	7	90	0	56	56	2	0	40	1.13
145306--145343	15	2.5	15	95	0	67	44	13	36	5	1.66

Tables:   1

The End!