Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016406.1 Corchorus olitorius cultivar O-4 contig16439, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32731

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5998--6039
3
14.0
3
85
9
59
64
33
2
0
1.07
10628--10656
3
9.7
3
100
0
58
65
0
34
0
0.93
20814--20911
50
2.0
49
91
2
160
22
18
10
48
1.77
23265--23303
19
2.1
19
90
0
60
30
2
17
48
1.61
28578--28617
19
2.1
19
100
0
80
37
12
5
45
1.64
28684--28740
5
12.2
5
85
14
86
21
19
0
59
1.38
28684--28740
13
4.1
14
91
8
82
21
19
0
59
1.38
28712--28756
21
2.1
21
84
8
56
31
13
0
55
1.38
29418--30524
333
3.3
329
84
3
1423
34
13
15
36
1.87
30442--30643
100
2.0
100
83
1
253
39
10
16
33
1.83
30542--32728
333
6.6
330
83
3
2509
34
14
14
36
1.87

Tables:   1

The End!