Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016428.1 Corchorus olitorius cultivar O-4 contig16461, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44672

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--3615
659
5.5
661
84
4
4518
36
14
15
33
1.88
2--3621
331
11.0
329
82
6
3917
36
14
15
33
1.88
5310--5355
21
2.1
22
84
4
58
17
19
21
41
1.90
11932--12092
85
1.9
85
93
0
277
27
20
13
37
1.91
14884--14947
17
3.2
21
66
20
64
51
10
1
35
1.47
14891--14951
18
3.2
18
68
28
54
52
9
1
36
1.45
14872--14952
39
2.0
40
95
2
146
51
8
2
37
1.46
15577--15635
29
2.0
30
90
3
93
40
18
5
35
1.73
20700--20758
29
2.0
29
86
0
82
42
3
20
33
1.69
20715--20776
30
2.1
29
87
3
88
33
6
20
38
1.79
21189--21258
36
1.9
36
91
0
113
60
8
10
21
1.55

Tables:   1

The End!