Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016435.1 Corchorus olitorius cultivar O-4 contig16468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119410

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2643--2699
29
2.0
29
83
12
75
49
22
12
15
1.78
32967--32991
6
4.2
6
100
0
50
20
64
16
0
1.30
40656--40693
5
7.8
5
94
5
69
21
18
0
60
1.36
41469--47855
323
19.7
322
84
5
6920
33
14
16
35
1.89
41469--48147
968
6.9
962
83
6
7042
33
14
16
35
1.89
41469--48147
647
10.3
644
83
6
7059
33
14
16
35
1.89
57132--57232
50
2.0
50
96
0
184
43
12
14
28
1.83
57139--57256
50
2.4
49
83
13
136
42
10
16
31
1.81
59366--59423
21
2.9
19
75
9
62
36
12
6
44
1.68
64145--64309
31
5.5
31
68
12
119
33
18
19
27
1.95
64149--64308
60
2.7
60
90
1
241
35
18
18
27
1.95
64180--64281
29
3.4
29
69
15
91
31
20
19
28
1.97
64351--64458
31
3.6
29
73
14
94
25
18
21
34
1.96
76703--76772
36
1.9
36
91
0
113
21
10
8
60
1.55
77801--77847
25
1.9
24
91
4
76
55
6
6
31
1.51
86624--86736
56
2.0
56
100
0
226
21
22
19
37
1.95
93289--93346
19
2.9
20
87
5
73
37
12
18
31
1.88
93289--93347
21
3.0
20
87
5
75
37
11
18
32
1.87
98247--98312
31
2.1
31
83
5
80
40
13
10
34
1.79
106331--106410
31
2.6
31
78
7
90
26
23
17
32
1.97
106395--106481
31
2.8
31
85
1
111
13
20
24
41
1.89
117923--118012
46
2.0
46
100
0
180
26
24
7
41
1.82

Tables:   1

The End!